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-rw-r--r--libre/sagemath/PKGBUILD18
-rw-r--r--libre/sagemath/package.patch6
-rw-r--r--libre/sagemath/sagemath-cython0.25.patch30
3 files changed, 43 insertions, 11 deletions
diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD
index c27c8dad6..f43f2f295 100644
--- a/libre/sagemath/PKGBUILD
+++ b/libre/sagemath/PKGBUILD
@@ -1,4 +1,4 @@
-# $Id: PKGBUILD 192974 2016-10-22 14:14:48Z arojas $
+# $Id: PKGBUILD 194994 2016-11-07 21:36:32Z felixonmars $
# Maintainer (Arch): Evgeniy Alekseev <arcanis.arch at gmail dot com>
# Maintainer (Arch): Antonio Rojas <arojas@archlinux.org>
# Contributor (Arch): Daniel Wallace <danielwallace at gtmanfred dot com>
@@ -11,7 +11,7 @@
pkgname=sagemath
pkgver=7.4
-pkgrel=2.parabola1
+pkgrel=3.parabola1
pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty support"
arch=(i686 x86_64 armv7h)
url="http://www.sagemath.org"
@@ -26,31 +26,33 @@ optdepends=('cython2: to compile cython code' 'python2-pkgconfig: to compile cyt
'coin-or-cbc: COIN backend for numerical computations' 'coin-or-csdp: for computing Lovász theta-function of graphs'
'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
- 'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'gap-data: for computing Galois groups'
+ 'coxeter3: Coxeter groups implementation' 'cryptominisat2: SAT solver' 'gap-data: for computing Galois groups'
'lrs: Algorithms for linear reverse search used in game theory and for computing volume of polytopes'
'libhomfly: for computing the homfly polynomial of links' 'libbraiding: for computing in braid groups'
'sagemath-jupyter: Jupyter kernel')
makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc libhomfly libbraiding
- mcqd coxeter3 cryptominisat modular_decomposition bliss-graphs tdlib python2-pkgconfig meataxe) # libfes
+ mcqd coxeter3 cryptominisat2 modular_decomposition bliss-graphs tdlib python2-pkgconfig meataxe) # libfes
conflicts=(sage-mathematics)
replaces=(sage-mathematics)
provides=(sage-mathematics)
source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
env.patch skip-check.patch cython-sys-path.patch is-package-installed.patch package.patch disable-fes.patch
- jupyter-path.patch test-optional.patch python-2.7.11.patch ecm-7.patch increase-rtol.patch sagemath-singular4.patch)
+ jupyter-path.patch test-optional.patch python-2.7.11.patch ecm-7.patch increase-rtol.patch sagemath-singular4.patch
+ sagemath-cython0.25.patch)
md5sums=('8311ee35a309dbc668b5148795211254'
'784ba3fca83f24ed0bbf62e01fa4e967'
'6cafcb381437d4751fd55b25d5090987'
'a1bcdd3fe620dbae60ed8b0e98b2ece7'
'5dca842e4440e4ef235ae18c1b1f20e3'
- '493a9e0eae9b2ef87544b42785ae11ea'
+ 'ccfd5b1bc4796f414f1531be52504dd7'
'06a67e611d10aa2381efe1f08ea4ffd9'
'0d88207416dfb98a17bf8886257d9a02'
'921017fd2d9dadbb6b602ac0476bfd58'
'ef927896f2071b442b1d07d7e69f5f3a'
'0c9a57d35de80c2cd418ebec912efbbb'
'39d3fded716d2a7ae0ab03e0896b7497'
- '4bd7305e8b69add8356f9751470cf587')
+ '4bd7305e8b69add8356f9751470cf587'
+ '0ba2b4266f14b19319ece3996be70511')
prepare(){
cd sage-$pkgver
@@ -88,6 +90,8 @@ prepare(){
patch -p1 -i ../is-package-installed.patch
# port to Singular 4 https://trac.sagemath.org/ticket/17254
patch -p1 -i ../sagemath-singular4.patch
+# fix build with cython 0.25
+ patch -p1 -i ../sagemath-cython0.25.patch
# use python2
sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
diff --git a/libre/sagemath/package.patch b/libre/sagemath/package.patch
index ef449fdf3..0139f4b15 100644
--- a/libre/sagemath/package.patch
+++ b/libre/sagemath/package.patch
@@ -20,11 +20,10 @@
class CythonizeExtension(Extension):
"""
-@@ -75,15 +73,7 @@
- try:
+@@ -76,14 +74,7 @@
condition = kwds.pop("condition")
except KeyError:
-- pkg = kwds.pop("package")
+ pkg = kwds.pop("package")
- try:
- pkginfo = all_packages[pkg]
- except KeyError:
@@ -37,4 +36,3 @@
if condition:
return Extension(*args, **kwds)
else:
-
diff --git a/libre/sagemath/sagemath-cython0.25.patch b/libre/sagemath/sagemath-cython0.25.patch
new file mode 100644
index 000000000..b6bcfa5ef
--- /dev/null
+++ b/libre/sagemath/sagemath-cython0.25.patch
@@ -0,0 +1,30 @@
+--- a/src/setup.py 2016-11-05 19:34:44.701025334 +0000
++++ b/src/setup.py 2016-11-05 19:46:00.706210289 +0000
+@@ -562,16 +562,6 @@
+ import Cython.Compiler.Options
+ import Cython.Compiler.Main
+
+- # Sage uses these directives (mostly for historical reasons).
+- Cython.Compiler.Options.embed_pos_in_docstring = True
+- Cython.Compiler.Options.directive_defaults['autotestdict'] = False
+- Cython.Compiler.Options.directive_defaults['cdivision'] = True
+- Cython.Compiler.Options.directive_defaults['fast_getattr'] = True
+- # The globals() builtin in Cython was fixed to return to the current scope,
+- # but Sage relies on the broken behavior of returning to the nearest
+- # enclosing Python scope (e.g. to perform variable injection).
+- Cython.Compiler.Options.old_style_globals = True
+-
+ debug = False
+ if os.environ.get('SAGE_DEBUG', None) != 'no':
+ print('Enabling Cython debugging support')
+@@ -608,7 +598,10 @@
+ force=force,
+ aliases=aliases,
+ compiler_directives={
++ 'autotestdict': False,
++ 'cdivision': True,
+ 'embedsignature': True,
++ 'fast_getattr': True,
+ 'profile': profile,
+ })
+